Stephane Cotin

Short Bio

Short Bio – I am Research Director at Inria and leader of the MIMESIS team. My main research interests are in real-time physics-based simulation (of soft tissues, fluids, flexible medical devices, imaging processes) and medical applications of this research, such as training, planning and image guided therapy. I am author or co-author of about 150 scientific articles and involved with several key conferences of our research domain. In an effort to disseminate our work and to accelerate research in these fields, I initiated and developed the SOFA project, which is now a reference Open Source solution for developing advanced simulations. I am also a co-founder and president of the scientific board of InSimo. Before this I was  the research lead and vice-head of the Simulation group at CIMIT and an instructor at Harvard Medical School

Interactive Numerical Simulation for Medicine

My research, and the main focus of my team, is to develop new solutions at the crossroad between imaging, robotics, medicine and computer science.  My other objective is to create a synergy between clinicians and scientists as a mean to develop new technologies that can redefine healthcare. The scientific objectives of our new team, MIMESIS, are related to this ambitious objective. Over the past years we have developed new approaches supporting advanced simulations in the context of simulation for training. The best example of our success in this area was certainly the work done in collaboration with the HelpMeSee foundation, leading to the creation of our start-up InSimo. We now propose to focus our research on the use of real-time simulation for per-operative guidance. The underlying objectives include patient-specific biophysical modeling, dedicated numerical techniques for real-time computation, data assimilation and data-driven simulation.

Awards & Honors

Dirk Bartz Medical Prize – Eurographics 2015 – Award for our contribution to medical simulation through the development of SOFA, Zurich, 2015.
Invitation to the French National Congress – Demonstration of our work on cataract surgery with HelpMeSee, Paris, 2014.
Best Paper Award – ISMAR 2013 – Image-guided Simulation of Heterogeneous Tissue Deformation For Augmented Reality during Hepatic Surgery.  IEEE International Symposium on Mixed and Augmented Reality, 2013. 
Young Scientist Award – MICCAI 2009 – Toward Real-Time Simulation of Blood-Coil Interaction during Aneurysm Embolization. London, 2009. 

 

Best Paper Award – VRIPHYS 2005 – Interactive physically-based simulation of Catheter and Guidewire, Proc VRIPHYS, Oct 2005.
US Army’s Greatest Inventions Award – Special award for our work on emergency training, Washington DC, 2005
CIMIT Career Award – Personal award and funding for my work on surgical training, Boston, 2004
Edward M. Kennedy Award for Health Care Innovation – 2003 – Award for my contributions to medical training and education
Elsevier Computer & Graphics Top Cited Article (2000-2010) – Interactive Physics-based Simulation of Catheter and Guidewire. Computers & Graphics, Volume 30, Issue 3, pages 416-422 (2006).

Lectures & Keynotes

2017: invited talk at the Academy of Surgery (Paris, France)
2017: invited talk at the MEVIS Lab – “Numerical Simulation in Medicine, from Training to Per-Operative Guidance” (Bremen, Germany)
2017: invited talk at the Annual meeting on Image-Guided and Computer-Assisted Liver Surgery – “Augmented Liver Surgery: combining image guidance and computer science” (Mainz, Germany)
2017: invited talk at the 123rd edition of the French Ophthalmology Association (SFO) – “High-Fidelity Training System for Retina Surgery” (Paris, France)
2016: invited talk at the First European workshop on Nanomedicine, Modeling, Virtual Reality and Robotics applied to surgery (Strasbourg, France)
2016: invited talk at the 14th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering (Tel Aviv, Israel)
2016: invited talk at the Business Engineering and Surgical Technologies symposium (Strasbourg, France)
2016: invited talk at the OpenYourMind seminar (Paris, France)
2015: keynote lecture at the 10th Computational Biomechanics for Medicine (Munich, Germany)
2015: keynote lecture at Visual Computing in Biology and Medicine (Chester, UK)
2015: invited talk at HCST Medical Robotics (Tel Aviv, Israel)
2015: invited speaker at the International Conference on Augmented and Virtual Reality (Salento, Italy)
2014: lecture at College de France, “Simulation en médecine : présent et futur” (Paris, France)
2014: invited presentation of our work on the HelpMeSee project, Assemblée Nationale (Paris, France)
2013: invited presentation, séminaire intergouvernemental sur le numérique (Paris, France)
2012: keynote at VRIPHYS conference (Darmstadt, Germany)
2010: invited lecture, INTS conference (Montpellier, France)
2010: invited lecture, Annual National Robotics Meeting  (La Rochelle, France)
2009: invited lecture, Computer Science Colloquium, Korean Institute of Technology (South Korea)
2009: invited lecture, Colloque de la Cité des Géométries (Jeumont, France)

Past & Current Projects

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    CELTS

    Laparoscopic Skills Trainer

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    EV3

    Endovascular Simulator

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    VIRGIL

    Chest Trauma Training System

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    RaSimAs

    Regional Anesthesia Simulator

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    Augmented Reality

    Guidance during surgery

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    Anato’mime

    Project 6 Description

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    Cataract Surgery

    The HelpMeSee project

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    Retina Surgery

    High-Fidelity Training System

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    Electrophysiology

    Training for Cardiac Procedures

Computer-enhanced laparoscopic training system

Computer-Enhanced Laparoscopic Training System

CELTS represents an innovative and intuitive solution to early laparoscopic surgical training. This training system arose from surveys of practicing laparoscopic surgeons and addresses the skills required to attain proficiency in early surgical practice. Unlike virtual reality simulators, CELTS uses real laparoscopes, video displays and exchangeable instruments, so learning is intuitive to the student. An integrated tracking device follows both right and left instrument position while the software computes a set of key parameters including depth perception, ambidexterity, smoothness of motion, instrument orientation, path length and time. From these parameters, a single score describing student performance, is instantaneoulsy computed and displayed to the user.

The CELTS hardware and software architectures were expressly designed to permit task-independent performance assessment. Beginning with some of the SAGES FLS tasks, CELTS also permits suturing using actual needles and suture, including laceration repair and Nissen wraps. The score computed by the system represents a statistical comparison of student performance to an archived and expandable base of experts. CELTS is web-compatible, so scores can be transmitted to central data files at offsite locations. .

Related publications:

  • Nicholas Stylopoulos, Stéphane Cotin, Sk Maithel, M Ottensmeyer, Pg Jackson, et al.. Computer-enhanced laparoscopic training system (CELTS): bridging the gap. Surgical Endoscopy and Other Interventional Techniques, 2004, 18 (5), pp.782--789.
  • Stéphane Cotin, Nicholas Stylopoulos, Mark Ottensmeyer, Paul Neumann, Ryan Bardsley, et al.. Surgical training system for laparoscopic procedures. US Patent App. 10/797,874. 2004.
  • Nicholas Stylopoulos, Stéphane Cotin, Steven Dawson, Mark Ottensmeyer, Paul Neumann, et al.. CELTS: a clinically-based Computer Enhanced Laparoscopic Training System. Stud Health Technol Inform., 2003, 94, pp.336--342.
  • Stéphane Cotin, Nicholas Stylopoulos, Mark Ottensmeyer, Paul Neumann, David Rattner. Metrics for laparoscopic skills trainers: the weakest link!. International Conference on Medical Image Computing and Computer-Assisted Intervention, . pp.35--43, 2002.

EV3

Simulation of Endovascular Procedures

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Augmented Reality in Surgery

General Description

 

Despite the improvements of surgical techniques and tools, some interventions remain very challenging for clinicians. During abdominal minimally invasive surgery visual feedback is limited. Only a partial view of the organ’s surface is seen through the endoscopic camera. Moreover, the pneumoperitoneum, required for  minimally invasive procedures, strongly deforms the abdominal organs, making it very difficult to mentally register the pre-operative CT data.  Still, the surgeons need to know where internal structures such as tumors or vessels are located. Therefore, they have to mentally register the preoperative images of the organs onto the endoscopic view to locate these structures.

Our contribution is to provide surgeons with an enhanced visualization of organ’s internal structures during the surgery. This involves biomechanical modeling of the liver, including its vascular structures, and real-time, elastic registration of the pre-operative data onto a partial view of the liver surface. This surface is reconstructed from a pair of laparoscopic images acquired with a stereo-endoscopic camera (Storz or Intuitive Surgical).

Related publications:

Anatomime

Anatomical Mirror

General Description

Many approaches have been proposed to represent and structure anatomy in order to facilitate its learning: illustrations, books, cadaver dissections and 3D models. However, in these static media, it is difficult to understand and analyse motion, which is essential for a better understanding of anatomy. We have developed an original and innovative tool to learn anatomy named "Anatomime". It allows the user to visualize a human-size virtual anatomical model (skin, skeleton, muscles, nerves, veins, arteries and organs) while it follows the user's movements. A Kinect is used to capture body motions, and a physics-based model is used to provide a robust, realistic animation of the virtual body.

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High-fidelity training

Cataract Surgery Simulation

General Description

At the center of HelpMeSee’s global campaign to reduce cataract blindness is a simulation-based training program focused on training specialists in MSICS (Manual Surgical Incision Cataract Surgery), a high quality and low-cost procedure that treats cataract blindness. Our training program prepares eye care professionals to deliver the high-volume MSICS procedures needed to reduce the backlog of patients awaiting treatment.

To make this large-scale training possible, we are developing HelpMeSee’s Eye Surgical Simulator, which combines realistic computer graphics and physics modeling with motion controls and haptic feedback to accurately simulate the MSICS procedure. This surgical simulator is part of an integrated learning system designed to support the training of tens of thousands of cataract surgeons. The benefits of simulation-based training include

  • Ability to achieve a higher level of proficiency before completing the live surgery that is part of training
  • Monitoring of surgical performance and improved instructors’ feedback
  • Unlimited repetition of surgical steps until the desired level of proficiency is achieved
  • Documentation of the specialist’s proficiency level through each stage of training

The HelpMeSee simulation training program is intended to replace the traditional MSICS training, which is primarily dependent on performing live surgery. HelpMeSee believes that the Eye Surgical Simulator will reduce the time required to acquire surgical skills and qualifying for independent surgery. Once completed, simulation-based training will likely prove to be a more effective method to train the large numbers of qualified surgeons who are needed to significantly reduce the number of blind people due to cataracts.

Related publications

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RESET

Retina Surgery Training

Retina surgery is an increasingly performed procedure for the treatment of a wide spectrum of retinal pathologies. Yet, as most micro-surgical techniques, it requires long training periods before being mastered. To properly answer requests from clinicians for highly realistic training on one hand, and new requirements from accreditation or recertification from surgical societies on the other hand, we propose to develop a high-fidelity training system for retinal surgery. This simulator will be built upon our strong scientific expertise in the field of real-time simulation, and a success story for technology transfer in the field of cataract surgery simulation. Members of the consortium have a long expertise in the development of prototypes, as well as collaboration with clinical partners. The simulation system that we propose to develop will be based on the Open Source simulation platform SOFA, and will rely on expertise from our partners to ensure clinical and industrial relevance.

Sample details

Project Name

General Description

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John Smith, General Manager Company Name

Journals & conferences

Publications

Also on google scholar: https://scholar.google.com/citations?user=7siqmQwAAAAJ



150 documents

Journal articles

  • Erwan Kerrien, Ahmed Yureidini, Jeremie Dequidt, Christian Duriez, René Anxionnat, et al.. Blood vessel modeling for interactive simulation of interventional neuroradiology procedures. Medical Image Analysis, Elsevier, 2017, 35, pp.685 - 698. <10.1016/j.media.2016.10.003>. <hal-01390923>
  • Huu Phuoc Bui, Satyendra Tomar, Hadrien Courtecuisse, Stéphane Cotin, Stéphane Bordas. Real-time Error Control for Surgical Simulation. IEEE Transactions on Biomedical Engineering, Institute of Electrical and Electronics Engineers, 2017, pp.12. <hal-01514621>
  • Zhifan Jiang, Jean-François Witz, Pauline Lecomte-Grosbras, Jeremie Dequidt, Stéphane Cotin, et al.. Multiorgan Motion Tracking in Dynamic Magnetic Resonance Imaging for Evaluation of Pelvic System Mobility and Shear Strain. Strain, Wiley-Blackwell, 2017, 53 (2), <10.1111/str.12224 >. <hal-01496177v2>
  • Seong-Ho Kong, Nazim Haouchine, Renato Soares, Andrey S Klymchenko, Bohdan Andreiuk, et al.. Robust Augmented Reality registration method for Localization of Solid Organs’ Tumors Using CT-derived Virtual Biomechanical Model and Fluorescent Fiducials. Surgical Endoscopy, Springer Verlag (Germany), 2016, <10.1007/s00464-016-5297-8>. <hal-01314963v2>
  • Christoph Paulus, Lionel Untereiner, Hadrien Courtecuisse, Stephane Cotin, David Cazier. Virtual Cutting of Deformable Objects based on Efficient Topological Operations. Visual Computer, Springer Verlag, 2015, 31 (6-8), pp.831-841. <10.1007/s00371-015-1123-x>. <hal-01162099>
  • Nazim Haouchine, Jeremie Dequidt, Marie-Odile Berger, Stephane Cotin. Monocular 3D Reconstruction and Augmentation of Elastic Surfaces with Self-occlusion Handling. IEEE Transactions on Visualization and Computer Graphics, Institute of Electrical and Electronics Engineers, 2015, pp.14. <10.1109/TVCG.2015.2452905>. <hal-01186011>
  • Nazim Haouchine, Stephane Cotin, Igor Peterlik, Jeremie Dequidt, Mario Sanz-Lopez, et al.. Impact of Soft Tissue Heterogeneity on Augmented Reality for Liver Surgery. IEEE Transactions on Visualization and Computer Graphics, Institute of Electrical and Electronics Engineers, 2015, 21 (5), pp.584 - 597. <10.1109/TVCG.2014.2377772>. <hal-01136728>
  • Rosalie Plantefève, Igor Peterlik, Nazim Haouchine, Stéphane Cotin. Patient-specific Biomechanical Modeling for Guidance during Minimally-invasive Hepatic Surgery. Annals of Biomedical Engineering, Springer Verlag, 2015. <hal-01205194>
  • Zhifan Jiang, Jean-Francois Witz, M Lecomte-Grosbras, Jeremie Dequidt, Christian Duriez, et al.. B-spline Based Multi-organ Detection in Magnetic Resonance Imaging. Strain, Wiley-Blackwell, 2015, 51, pp.235 - 247. <10.1111/str.12136>. <hal-01204589v2>
  • Noura Hamzé, Igor Peterlík, Stéphane Cotin, Caroline Essert. Preoperative trajectory planning for percutaneous procedures in deformable environments. Computerized Medical Imaging and Graphics, Elsevier, 2015, 47, <10.1016/j.compmedimag.2015.10.002>. <hal-01242842>
  • G Kazmitcheff, Yann Nguyen, Mathieu Miroir, F Péan, E Ferrary, et al.. Middle-ear microsurgery simulation to improve new robotic procedures.. Biomed Res Int, 2014, pp.0. <10.1155/2014/891742>. <hal-01082845>
  • Hadrien Courtecuisse, Jeremie Allard, Pierre Kerfriden, Stephane Pierre-Alain Bordas, Stephane Cotin, et al.. Real-time simulation of contact and cutting of heterogeneous soft-tissues. Medical Image Analysis, Elsevier, 2014, 18 (2), pp.394-410. <10.1016/j.media.2013.11.001>. <hal-01097108>
  • Julien Bosman, Christian Duriez, Stéphane Cotin. Modèle pour la simulation de tissus connectifs. Revue Electronique Francophone d'Informatique Graphique, Association Française d'Informatique Graphique, 2014, pp.13. <hal-01095301>
  • Vincent Majorczyk, Stéphane Cotin, Jérémie Allard, Christian Duriez. Simulation de l'interaction entre film fluide et solides déformables. Revue Electronique Francophone d'Informatique Graphique, Association Française d'Informatique Graphique, 2014, 8 (2), pp.10. <hal-01165295>
  • Guillaume Kazmitcheff, Yann Nguyen, Mathieu Miroir, Fabien Péan, Evelyne Ferrary, et al.. Middle-Ear Microsurgery Simulation to Improve New Robotic Procedures. BioMed Research International , Hindawi Publishing Corporation, 2014, pp.10. <10.1155/2014/891742>. <hal-01105278>
  • Guillaume Kazmitcheff, Yann Nguyen, Mathieu Miroir, Evelyne Ferrary, Christian Duriez, et al.. Conception d’un atlas mécanique pour la simulation de la chirurgie de l’oreille moyenne. Annales françaises d'Oto-rhino-laryngologie et de Pathologie Cervico-faciale, Elsevier, United States, 2013, 130 (4), pp.A76. <hal-01148675>
  • Yann Nguyen, Guillaume Kazmitcheff, Mathieu Miroir, Evelyne Ferrary, Christian Duriez, et al.. Évaluation de techniques chirurgicales innovantes pour l’otospongiose à l’aide d’un simulateur chirurgical. Annales françaises d'Oto-rhino-laryngologie et de Pathologie Cervico-faciale, Elsevier, United States, 2013, 130 (4), pp.A76. <hal-01148667>
  • Pedro Moreira, Igor Peterlik, Herink Mark, Christian Duriez, Stéphane Cotin, et al.. Modelling Prostate Deformation: SOFA versus Experiments. Mechanical Engineering Research, Canadian Center of Science and Education, 2013, 3 (2), p64. <10.5539/mer.v3n2p64>. <hal-00915244>
  • Hugo Talbot, Stéphanie Marchesseau, Christian Duriez, Maxime Sermesant, Stéphane Cotin, et al.. Towards an Interactive Electromechanical Model of the Heart. Interface Focus, Royal Society publishing, 2013, The Virtual Physiological Human: Integrative Approaches to Computational Biomedicine, 3 (2), pp.4. <http://rsfs.royalsocietypublishing.org/content/3/2/20120091.full.pdf+html>. <10.1098/rsfs.2012.0091>. <hal-00797354>
  • Guillaume Kazmitcheff, Mathieu Miroir, Yann Nguyen, Evelyne Ferrary, Olivier Sterkers, et al.. Validation Method of a Middle Ear Mechanical Model to Develop a Surgical Simulator. Audiology and Neurotology, Karger, 2013, <10.1159/000356301>. <hal-00919918>
  • Nazim Haouchine, Jérémie Dequidt, Marie-Odile Berger, Stéphane Cotin. Deformation-based Augmented Reality for Hepatic Surgery. Studies in Health Technology and Informatics, IOS Press, 2013, 184. <hal-00768372>
  • Mohamed Guiatni, Vincent Riboulet, Christian Duriez, Abderrahmane Kheddar, Stéphane Cotin. A Combined Force and Thermal Feedback Interface for Minimally Invasive Procedures Simulation. IEEE/ASME Transactions on Mechatronics, Institute of Electrical and Electronics Engineers, 2013, 18 (3), pp.1170-1181. <10.1109/TMECH.2012.2197862>. <lirmm-00783583>
  • Guillaume Kazmitcheff, Mathieu Miroir, Christian Duriez, Yann Nguyen, Stéphane Mazalaigue, et al.. Mise au point d’un simulateur et d’un modèle mécanique de l’oreille moyenne pour la chirurgie ossiculaire. Annales françaises d'Oto-rhino-laryngologie et de Pathologie Cervico-faciale, Elsevier, United States, 2012, 129 (4), pp.A77. <10.1016/j.aforl.2012.07.204>. <hal-01148673>
  • Igor Peterlík, Christian Duriez, Stéphane Cotin. Modeling and Real-Time Simulation of a Vascularized Liver Tissue. Medical Image Computing and Computer-Assisted Intervention--MICCAI 2012, 2012, pp.50--57. <hal-00800546>
  • Igor Peterlik, Mourad Nouicer, Christian Duriez, Stéphane Cotin, Abderrahmane Kheddar. Constraint-based haptic rendering of multirate compliant mechanisms. IEEE Transactions on Haptics (ToH), IEEE, 2011, 4 (3), pp.175-187. <10.1109/TOH.2011.41>. <lirmm-00784081>
  • Yiyi Wei, Stéphane Cotin, Jérémie Allard, Le Fang, Chunhong Pan, et al.. Interactive Blood-Coil Simulation in Real-time during Aneurysm Embolization. Computers and Graphics, Elsevier, 2011, Visual Computing in Biology and Medicine, 35 (2), pp.422-430. <10.1016/j.cag.2011.01.010>. <hal-00688443>
  • Hadrien Courtecuisse, Hoeryong Jung, Jérémie Allard, Christian Duriez, Doo Yong Lee, et al.. GPU-based Real-Time Soft Tissue Deformation with Cutting and Haptic Feedback. Progress in Biophysics and Molecular Biology, Elsevier, 2010, Special Issue on Biomechanical Modelling of Soft Tissue Motion, 103 (2-3), pp.159-168. <10.1016/j.pbiomolbio.2010.09.016>. <hal-00686056>
  • Jérémie Allard, Maud Marchal, Stéphane Cotin. Fiber-based Fracture Model for Simulating Soft Tissue Tearing. Studies in Health Technology and Informatics, IOS Press, 2009, Medicine Meets Virtual Reality 17, 142, pp.13-18. <10.3233/978-1-58603-964-6-13>. <hal-00841567>
  • Julien Lenoir, Stéphane Cotin, Christian Duriez, Paul Neumann. Interactive physically-based simulation of catheter and guidewire. Computers & Graphics, 2006, 30 (3), pp.416--422. <hal-01386217>
  • Christian Duriez, Stéphane Cotin, Julien Lenoir, Paul Neumann. New approaches to catheter navigation for interventional radiology simulation. Computer Aided Surgery, Taylor & Francis, 2006, 11 (6), pp.300--308. <hal-01386216>
  • Xunlei Wu, Vincent Pegoraro, Vincent Luboz, Paul F Neumann, Ryan Bardsley, et al.. New approaches to computer-based interventional neuroradiology training. Studies in Health Technology and Informatics, IOS Press, 2005, 111, pp.602--607. <hal-01386223>
  • Julien Lenoir, Stéphane Cotin, Christian Duriez, Paul Neumann. Physics-based models for catheter, guidewire and stent simulation. Studies in Health Technology and Informatics, IOS Press, 2005, 119, pp.305. <hal-01386221>
  • Nicholas Stylopoulos, Stéphane Cotin, Sk Maithel, M Ottensmeyer, Pg Jackson, et al.. Computer-enhanced laparoscopic training system (CELTS): bridging the gap. Surgical Endoscopy, Springer Verlag (Germany), 2004, 18 (5), pp.782--789. <hal-01386227>
  • Nicholas Stylopoulos, Stéphane Cotin, Steven Dawson, Mark Ottensmeyer, Paul Neumann, et al.. CELTS: a clinically-based Computer Enhanced Laparoscopic Training System. Stud Health Technol Inform., 2003, 94, pp.336--342. <hal-01386229>
  • Amy Kerdok, Stéphane Cotin, Mark P Ottensmeyer, Anna M Galea, Robert D Howe, et al.. Truth cube: Establishing physical standards for soft tissue simulation. Medical Image Analysis, Elsevier, 2003, 7 (3), pp.283--291. <hal-01386230>
  • D. W. Shaffer, Sl Dawson, D Meglan, Stéphane Cotin, M Ferrell, et al.. Design principles for the use of simulation as an aid in interventional cardiology training. Minimally Invasive Therapy & Allied Technologies, 2001, 10 (2), pp.75--82. <hal-01386232>
  • Stéphane Cotin, Hervé Delingette, Nicholas Ayache. A hybrid elastic model for real-time cutting, deformations, and force feedback for surgery training and simulation. The Visual Computer, 2000, 16 (8), pp.437--452. <hal-01386233>
  • Stéphane Cotin, Hervé Delingette, Nicholas Ayache. A Hybrid Elastic Model allowing Real-Time Cutting, Deformations and Force-Feedback for Surgery Training and Simulation. Visual Computer, Springer Verlag, 2000, 16 (8), pp.437--452. <10.1007/PL00007215>. <inria-00615105>
  • Steven L Dawson, Stéphane Cotin, Dwight Meglan, David W Shaffer, Margaret A Ferrell. Designing a Computer-Based Simulator for Interventional Cardiology Training. Catheterization and Cardiovascular Interventions, Wiley, 2000, 51 (4), pp.522--527. <hal-01386235>
  • Stéphane Cotin, Hervé Delingette, Nicholas Ayache. Real-time elastic deformations of soft tissues for surgery simulation. IEEE Transactions on Visualization and Computer Graphics, Institute of Electrical and Electronics Engineers, 1999, 5 (1), pp.62-73. <10.1109/2945.764872>. <inria-00615032>
  • Jacques Marescaux, Jean-Marie Clément, V. Tassetti, Christophe Koehl, Stéphane Cotin, et al.. Virtual reality applied to hepatic surgery simulation: the next revolution. Annals of Surgery, Lippincott, Williams & Wilkins, 1998, 228 (5), pp.627-34. <inria-00615079>
  • Nicholas Ayache, Stéphane Cotin, Hervé Delingette, Jean-Marie Clément, Jacques Marescaux. Simulation of Endoscopic Surgery. Minimally Invasive Therapy and Allied Technologies, Taylor & Francis, 1998, 7 (2), pp.71-77. <inria-00615086>
  • Jacques Marescaux, Jean-Marie Clément, M. Vix, Y. Russier, V. Tassetti, et al.. [A new concept in surgery of the digestive tract: surgical procedure assisted by computer, from virtual reality to telemanipulation]. Chirurgie -Paris-, Elsevier, 1998, 123 (1), pp.16-24. <inria-00615081>
  • Stéphane Cotin, Hervé Delingette, Nicholas Ayache, J.M. Clement, Jacques Marescaux, et al.. Simulation Active de Chirurgie Endoscopique. Revue Européenne de Technologie Biomédicale (RBM), undefined or unknown publisher, 1997, 19 (5), pp.167--172. <inria-00615076>
  • Gérald Quatrehomme, Stéphane Cotin, Gérard Subsol, Hervé Delingette, Yves Garidel, et al.. A Fully Three-Dimensional Method for Facial Reconstruction Based on Deformable Models. Journal of Forensic Sciences, Wiley, 1997, 42 (4), pp.649-652. <inria-00615074>
  • Jacques Marescaux, Jean-Marie Clément, M. Nord, Y. Russier, V. Tassetti, et al.. [A new concept in digestive surgery: the computer assisted surgical procedure, from virtual reality to telemanipulation]. Bulletin de l'Académie Nationale de Médecine, Elsevier Masson, 1997, 181 (8), pp.1609. <inria-00615065>
  • Stéphane Cotin, Hervé Delingette, M. Bro-Nielsen, Nicholas Ayache, Jean-Marie Clément, et al.. Geometric and physical representations for a simulator of hepatic surgery. Studies in Health Technology and Informatics, IOS Press, 1996, 29, pp.139-51. <inria-00615062>

Conference papers

  • Andrea Mendizabal, Rémi Duparc, Huu Phuoc Bui, Christoph Paulus, Igor Peterlik, et al.. Face-based Smoothed Finite Element Method for Real-time Simulation of soft tissue. SPIE Medical Imaging, Feb 2017, Orlando, United States. SPIE Medical Imaging. <hal-01444595>
  • Huu Phuoc Bui, Satyendra Tomar, Hadrien Courtecuisse, Stéphane Cotin, Stéphane Bordas. Real-time Error Control for Surgical Simulation. BIOMECHANICS AND COMPUTER ASSISTED SURGERY MEETS MEDICAL REALITY, Aug 2017, Lille, France. 2017, <http://595.euromech.org/>. <hal-01571194>
  • Raffaella Trivisonne, Erwan Kerrien, Stéphane Cotin. Augmented 3D Catheter Navigation using Constrained Shape from Template. Hamlyn Symposium, Jun 2017, London, United Kingdom. <hal-01545693>
  • Nazim Haouchine, Stéphane Cotin. Template-based Monocular 3D Recovery of Elastic Shapes using Lagrangian Multipliers. Computer Vision and Pattern Recognition (CVPR), Jul 2017, Honolulu, Hawai, United States. <hal-01524609>
  • Nazim Haouchine, Danail Stoyanov, Frederick Roy, Stéphane Cotin. DejaVu: Intra-operative Simulation for Surgical Gesture Rehearsal. Medical Image Computing and Computer Assisted Interventions Conference MICCAI 2017, Oct 2017, Quebec City, Canada. <hal-01542395>
  • Igor Peterlik, Nazim Haouchine, Lukáš Ručka, Stéphane Cotin. Image-driven Stochastic Identification of Boundary Conditions for Predictive Simulation. 20th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2017, Québec, Canada. 2017. <hal-01570811>
  • Nazim Haouchine, Stephane Cotin. Segmentation and Labelling of Intra-operative Laparoscopic Images using Structure from Point Cloud. International Symposium on Biomedical Imaging : "From Nano to Macro" (ISBI 2016), Apr 2016, Prague, Czech Republic. <hal-01314970>
  • Nazim Haouchine, Frederick Roy, Lionel Untereiner, Stéphane Cotin. Using Contours as Boundary Conditions for Elastic Registration during Minimally Invasive Hepatic Surgery. International Conference on Intelligent Robots and Systems, Oct 2016, Daejeon, South Korea. <hal-01353185>
  • Nazim Haouchine, Marie-Odile Berger, Stephane Cotin. Simultaneous Pose Estimation and Augmentation of Elastic Surfaces from a Moving Monocular Camera. International Symposium on Mixed and Augmented Reality, Sep 2016, Merida, Mexico. <hal-01353189>
  • Raffaella Trivisonne, Igor Peterlik, Stéphane Cotin, Hadrien Courtecuisse. 3D Physics-Based Registration of 2D Dynamic MRI Data. MMVR - Medicine Meets Virtual Reality, Apr 2016, Los Angeles, United States. 2016. <hal-01254388>
  • Hugo Talbot, Stephane Cotin, Reza Razavi, Christopher Rinaldi, Hervé Delingette. Personalization of Cardiac Electrophysiology Model using the Unscented Kalman Filtering. Computer Assisted Radiology and Surgery (CARS 2015), Jun 2015, Barcelona, Spain. <hal-01195719>
  • Bruno Marques, Rosalie Plantefeve, Frédérick Roy, Nazim Haouchine, Emmanuel Jeanvoine, et al.. Framework for augmented reality in Minimally Invasive laparoscopic surgery. HealthCom 2015, Oct 2015, Boston, United States. 2015 17th International Conference on E-health Networking, Application & Services (HealthCom) 2015, <10.1109/HealthCom.2015.7454467>. <hal-01315574>
  • Christoph Paulus, Nazim Haouchine, David Cazier, Stéphane Cotin. Surgical Augmented Reality with Topological Changes. Medical Image Computing and Computer Assisted Interventions, Oct 2015, München, Germany. <http://miccai2015.org/>. <hal-01184498v2>
  • Christoph Paulus, Nazim Haouchine, David Cazier, Stephane Cotin. Augmented Reality during Cutting and Tearing of Deformable Objects. The 14th IEEE International Symposium on Mixed and Augmented Reality, Sep 2015, Fukuoka, Japan. pp.6. <hal-01184495v2>
  • Christoph Paulus, Lionel Untereiner, Hadrien Courtecuisse, Stéphane Cotin, David Cazier. Virtual Cutting of Deformable Objects based on Efficient Topological Operations. Computer Graphics International, 2015, Strasbourg, France. 2015. <hal-01208546>
  • Hugo Talbot, Frederick Roy, Stéphane Cotin. Augmented Reality for Cryoablation Procedures. SIGGRAPH 2015, Aug 2015, Los Angeles, United States. <hal-01180848>
  • Bruno Marques, Nazim Haouchine, Rosalie Plantefeve, Stephane Cotin. Improving depth perception during surgical augmented reality. SIGGRAPH [Poster], Aug 2015, Los Angeles, United States. pp.Article No. 24, 2015, <10.1145/2787626.2792654>. <hal-01191101>
  • Hugo Talbot, Nazim Haouchine, Igor Peterlik, Jeremie Dequidt, Christian Duriez, et al.. Surgery Training, Planning and Guidance Using the SOFA Framework. Eurographics, May 2015, Zurich, Switzerland. <hal-01160297>
  • Nazim Haouchine, Alexandre Bilger, Jeremie Dequidt, Stephane Cotin. Fracture in Augmented Reality. SIGGRAPH [Poster], Aug 2015, Los Angeles, United States. 2015. <hal-01191090>
  • Noura Hamzé, Alexandre Bilger, Christian Duriez, Stéphane Cotin, Caroline Essert. Anticipation of Brain Shift in Deep Brain Stimulation Automatic Planning. IEEE Engineering in Medicine and Biology Society (EMBC’15), Aug 2015, Milan, Italy. IEEE, pp.3635 - 3638 2015, <10.1109/EMBC.2015.7319180>. <hal-01242851>
  • Guillaume Kazmitcheff, Yann Nguyen, Mathieu Miroir, Evelyne Ferrary, Stéphane Cotin, et al.. Virtual Simulation of Stapedotomy Surgery. ARO 2014, Feb 2014, San Diego, CA, United States. 2014. <hal-00919984>
  • Hugo Talbot, Myriam Lekkal, Rémi Béssard-Duparc, Stéphane Cotin. Interactive Planning of Cryotherapy Using Physically-Based Simulation. MMVR 21 - Medicine Meets Virtual Reality - 2014, Feb 2014, Manhattan Beach, California, United States. 2014. <hal-00918200>
  • Nazim Haouchine, Jérémie Dequidt, Igor Peterlik, Erwan Kerrien, Marie-Odile Berger, et al.. Towards an Accurate Tracking of Liver Tumors for Augmented Reality in Robotic Assisted Surgery. International Conference on Robotics and Automation (ICRA), Jun 2014, Hong Kong, China. 2014. <hal-01003262>
  • Alexandre Bilger, Éric Bardinet, Sara Fernández-Vidal, Christian Duriez, Pierre Jannin, et al.. Intra-operative Registration for Stereotactic Procedures driven by a combined Biomechanical Brain and CSF Model. ISBMS - International Symposium on Biomedical Simulation, Oct 2014, Strasbourg, France. 2014. <hal-01058435>
  • Guillaume Kazmitcheff, Hadrien Courtecuisse, Yann Nguyen, Mathieu Miroir, Alexis Bozorg-Grayeli, et al.. Haptic Rendering on Deformable Anatomical Tissues with Strong Heterogeneities. Eurohaptics 2014, Jun 2014, Versailles, France. Springer, 2014. <hal-01025614>
  • Mario Sanz-Lopez, Jérémie Dequidt, Erwan Kerrien, Christian Duriez, Marie-Odile Berger, et al.. Testbed for assessing the accuracy of interventional radiology simulations. ISBMS - 6th International Symposium on Biomedical Simulation, Oct 2014, Strasbourg, France. Springer, 2014, LNCS. <hal-01059892>
  • Alexandre Bilger, Eric Bardinet, Sara Fernández-Vidal, Christian Duriez, Pierre Jannin, et al.. Intra-operative Registration for Deep Brain Stimulation Procedures based on a Full Physics Head Model. MICCAI 2014 Workshop on Deep Brain Stimulation Methodological Challenges - 2nd edition, Sep 2014, Boston, United States. 2014. <hal-01060304>
  • Rosalie Plantefeve, Nazim Haouchine, Jean Pierre Radoux, Stéphane Cotin. Automatic Alignment of pre and intraoperative Data using Anatomical Landmarks for Augmented Laparoscopic Liver Surgery. International Symposium on Biomedical Simulation ISBMS, Oct 2014, Strasbourg, France. 2014. <hal-01068246>
  • Rosalie Plantefeve, Igor Peterlik, Hadrien Courtecuisse, Raffaella Trivisonne, Jean-Pierre Radoux, et al.. Atlas-based Transfer of Boundary Conditions for Biomechanical Simulation. MICCAI - 17th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2014, Boston, United States. 2014. <hal-01070339>
  • H Talbot, F Spadoni, Christian Duriez, M Sermesant, Stéphane Cotin, et al.. Interactive Training System for Interventional Electrocardiology Procedures. 6th International Symposium on Biomedical Simulation - ISBMS 2014, Oct 2014, Strabsourg, France. pp.11 - 19, 2014, <10.1007/978-3-319-12057-7_2>. <hal-01078209>
  • Hadrien Courtecuisse, Igor Peterlik, Raffaella Trivisonne, Christian Duriez, Stéphane Cotin. Constraint-Based Simulation for Non-Rigid Real-Time Registration. Medicine Meets Virtual Reality, Feb 2014, Manhattan Beach, California., United States. 2014. <hal-01160739>
  • Igor Peterlik, Hadrien Courtecuisse, Christian Duriez, Stéphane Cotin. Model-Based Identification of Anatomical Boundary Conditions in Living Tissues. Information Processing in Computer Assisted Interventions, Jun 2014, Fukuoka, Japan. 2014, <10.1007/978-3-319-07521-1_21>. <hal-01264434>
  • Nazim Haouchine, Stéphane Cotin, Jérémie Dequidt, Erwan Kerrien, Marie-Odile Berger. Réalité augmentée pour la chirurgie minimalement invasive du foie utilisant un modèle biomécanique guidé par l'image. Reconnaissance de Formes et Intelligence Artificielle (RFIA) 2014, Jun 2014, France. 2014. <hal-00988767>
  • Hugo Talbot, Federico Spadoni, Christian Duriez, Maxime Sermesant, Stéphane Cotin, et al.. Interactive Training System for Interventional Electrocardiology Procedures. Biomedical Simulation: 6th International Symposium, ISBMS 2014, Strasbourg, France, October 16-17, 2014. Proceedings, Oct 2014, Strasbourg, France. Lecture Notes in Computer Science (LNCS), 8789, pp.11-19, 2016, <10.1007/978-3-319-12057-7_2>. <hal-01338346>
  • Julien Bosman, Christian Duriez, Stéphane Cotin. Connective Tissues Simulation on GPU. 10th Workshop on Virtual Reality Interaction and Physical Simulation, Nov 2013, Lille, France. 2013. <hal-00916698>
  • Pauline Lecomte-Grosbras, Mouhamadou Nassirou - Diallo, Jean-François Witz, Damien Marchal, Jérémie Dequidt, et al.. Towards a better understanding of pelvic system disorders using numerical simulation. Medical Image Computing and Computer Assisted Intervention, Sep 2013, Nagoya, Japan. 2013. <hal-00831245>
  • Vincent Majorczyk, Stéphane Cotin, Christian Duriez, Jérémie Allard. Simulation of Lipofilling Reconstructive Surgery using coupled Eulerian Fluid and Deformable Solid Models. Medical Image Computing and Computer Assisted Intervention Society, Sep 2013, Nagoya, Japan. Springer, 2013. <hal-00838650>
  • Guillaume Kazmitcheff, Christian Duriez, Mathieu Miroir, Yann Nguyen, Olivier Sterkers, et al.. Registration of a Validated Mechanical Atlas of Middle Ear for Surgical Simulation. MICCAI 2013, 2013, Nagoya, Japan. 2013. <hal-00838431>
  • Nazim Haouchine, Jérémie Dequidt, Igor Peterlik, Erwan Kerrien, Marie-Odile Berger, et al.. Image-guided Simulation of Heterogeneous Tissue Deformation For Augmented Reality during Hepatic Surgery. ISMAR - IEEE International Symposium on Mixed and Augmented Reality 2013, Oct 2013, Adelaide, Australia. 2013. <hal-00842855>
  • Ahmed Yureidini, Erwan Kerrien, Stéphane Cotin. Robust RANSAC-based blood vessel segmentation. Dave R. Haynor and Sébastien Ourselin. SPIE Medical Imaging, Feb 2012, San Diego, CA, United States. SPIE Press, 8314, pp.8314M, 2012, Image Processing. <10.1117/12.911670>. <hal-00642003>
  • Nazim Haouchine, Jérémie Dequidt, Erwan Kerrien, Marie-Odile Berger, Stéphane Cotin. Physics-based Augmented Reality for 3D Deformable Object. Eurographics Workshop on Virtual Reality Interaction and Physical Simulation, Dec 2012, Darmstadt, Germany. 2012. <hal-00768362>
  • Alexandre Bilger, Caroline Essert, Christian Duriez, Stéphane Cotin. Brain-shift aware risk map for Deep Brain Stimulation Planning. DBSMC - MICCAI 2012 Workshop on Deep Brain Stimulation Methodological Challenges, Oct 2012, Nice, France. 2012. <hal-00736773>
  • Ahmed Yureidini, Erwan Kerrien, Jérémie Dequidt, Christian Duriez, Stéphane Cotin. Local implicit modeling of blood vessels for interactive simulation. Ayache, Nicholas and Delingette, Hervé and Golland, Polina and Moria, Kensaku. MICCAI - 15th International Conference on Medical Image Computing and Computer-Assisted Intervention, Oct 2012, Nice, France. Springer, 7510, pp.553-560, 2012, Lecture Notes in Computer Science; Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012. <10.1007/978-3-642-33415-3_68>. <hal-00741307>
  • Hugo Talbot, Christian Duriez, Hadrien Courtecuisse, Jatin Relan, Maxime Sermesant, et al.. Towards Real-Time Computation of Cardiac Electrophysiology for Training Simulator. Statistical Atlases and Computational Models of the Heart - STACOM 2012 in the 15th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI 2012, Oct 2012, Nice, France. Springer, 2012, Lecture Notes in Computer Science. <hal-00750835>
  • Hugo Talbot, Stéphanie Marchesseau, Christian Duriez, Hadrien Courtecuisse, Jatin Relan, et al.. Interactive Electromechanical Model of the Heart for Patient-Specific Therapy Planning and Training using SOFA. VPH 2012, Sep 2012, Londres, United Kingdom. 2012. <hal-00751537>
  • Alexandre Bilger, Jérémie Dequidt, Christian Duriez, Stéphane Cotin. Biomechanical Simulation of Electrode Migration for Deep Brain Stimulation. Gabor Fichtinger and Anne Martel and Terry Peters. 14th International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, Sep 2011, Toronto, Canada. Springer, 6891/2011, pp.339-346, 2011, Lecture Notes in Computer Science; Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011. <10.1007/978-3-642-23623-5_43>. <hal-00685737>
  • Igor Peterlik, Christian Duriez, Stéphane Cotin. Asynchronous haptic simulation of contacting deformable objects with variable stiffness. Intelligent Robots and Systems (IROS), 2011 IEEE/RSJ International Conference on, 2011, san francisco, United States. pp.2608--2613, 2011. <hal-00823762>
  • Ahmed Yureidini, Jérémie Dequidt, Erwan Kerrien, Christian Duriez, Stéphane Cotin. Computer-based simulation for the endovascular treatment of intracranial aneurysms. LIVIM Imaging Worshop, Dec 2011, Strasbourg, France. 2011. <hal-00641990>
  • Ahmed Yureidini, Erwan Kerrien, Stéphane Cotin. Reconstruction robuste des vaisseaux sanguins par surfaces implicites locales. Orasis, Jun 2011, Praz-sur-Arly, France. 2011. <inria-00579814>
  • Elodie Dumortier, Stephane Cotin, Jérémie Dequidt, Jean-Francois Rouland. Realisation d'un Prototype de Simulateur Fonctionnel pour la Chirurgie de la Cataracte. 117e CONGRES de la Société Française d'Ophtalmologie, 2011, paris, France. 2011. <hal-00839444>
  • Elodie Dumortier, Stephane Cotin, Jérémie Dequidt, Jean-Francois Rouland. Assessment Metrics For A Prototype Of Simulation System For Cataract Surgery Training. Annual Meeting of the Association for Research in Vision and Opthalmology, 2011, Fort Lauderdale, United States. 2011. <hal-00839445>
  • Elodie Dumortier, Stephane Cotin, Jérémie Dequidt, Jean-Francois Rouland. A Prototype of Simulation System for Cataract Surgery Training. European Society of Cataract & Refractive Surgeons Winter Meeting, 2011, Istanbul, Turkey. 2011. <hal-00839446>
  • Hadrien Courtecuisse, Jérémie Allard, Christian Duriez, Stéphane Cotin. Preconditioner-Based Contact Response and Application to Cataract Surgery. G. Fichtinger and A. Martel and T. Peters. MICCAI - 14th International Conference on Medical Image Computing and Computer Assisted Intervention - 2011, Sep 2011, Toronto, Canada. Springer, 6891, pp.315-322, 2011, Lecture Notes in Computer Science; MICCAI 2011, Part 1. <10.1007/978-3-642-23623-5_40>. <hal-00685593>
  • Olivier Comas, Stéphane Cotin, Christian Duriez. A Shell Model for Real-time Simulation of intra-ocular Implant Deployment. Bello, Fernando; Cotin, Stéphane. International Symposium on Computational Models for Biomedical Simulation, Jan 2010, Phoenix, United States. Springer, 5958, pp.160--170, 2010, Lecture Notes in Computer Science. <10.1007/978-3-642-11615-5_15>. <hal-00533430>
  • Olivier Comas, Christian Duriez, Stephane Cotin. Shell Model for Reconstruction and Real-Time Simulation of Thin Anatomical Structures. MICCAI, 2010, China. pp.371-379, 2010. <hal-00533492>
  • Elodie Dumortier, Stephane Cotin, Jérémie Dequidt, Christian Duriez, Jeremie Allard, et al.. Computer-Based Training System for Cataract Surgery. International ICST Conference on Electronic Healthcare for the 21st Century, 2010, Casablanca, Morocco. 2010. <hal-00839447>
  • Nadia Boubchir, Stephane Cotin, Olivier Comas, Frederick Roy, Christian Duriez, et al.. Computer-Based Simulation of Cataract Surgery: Toward a New Teaching Paradigm. Annual Meeting of the American Academy of Ophthalmology, 2010, Fort Lauderdale, United States. 2010. <hal-00839448>
  • Hadrien Courtecuisse, Jérémie Allard, Christian Duriez, Stéphane Cotin. Asynchronous Preconditioners for Efficient Solving of Non-linear Deformations. VRIPHYS - Virtual Reality Interaction and Physical Simulation, Nov 2010, Copenhagen, Denmark. Eurographics Association, pp.59-68, 2010, <10.2312/PE/vriphys/vriphys10/059-068>. <hal-00688865>
  • Hoeryong Jung, Stéphane Cotin, Christian Duriez, Jérémie Allard, Doo Yong Lee. High Fidelity Haptic Rendering for Deformable Objects Undergoing Topology Changes. EuroHaptics - Haptics: Generating and Perceiving Tangible Sensations International Conference, Jul 2010, Amsterdam, Netherlands. Springer, 6191, pp.262-268, 2010, LNCS. <10.1007/978-3-642-14064-8_38>. <hal-00688913>
  • Pierre-Frédéric Villard, Vincent Luboz, Paul Neumann, Stéphane Cotin, Steve Dawson. CT Scan Merging to Enhance Navigation in Interventional Radiology Simulation. Medicine Meet Virtual Reality conference 17, Jan 2009, Long Beach, United States. IOS Press, 142, pp.407-412, 2009, <http://ebooks.iospress.nl/publication/12058>. <10.3233/978-1-58603-964-6-407>. <hal-00973187>
  • Christian Duriez, Christophe Guébert, Maud Marchal, Stéphane Cotin, Laurent Grisoni. Interactive Simulation of Flexible Needle Insertions Based on Constraint Models. International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2009, Londres, United Kingdom. pp.291-299, 2009. <inria-00540334>
  • Jérémie Dequidt, Christian Duriez, Stéphane Cotin, Erwan Kerrien. Towards interactive planning of coil embolization in brain aneurysms. Yang, G.-Z. and Hawkes, D.J. and Rueckert, D. and Noble, A. and Taylor, C. Medical Image Computing and Computer Assisted Intervention - MICCAI 2009, Sep 2009, London, United Kingdom. Springer Berlin / Heidelberg, 5761, pp.377-385, 2009, Lecture Notes in Computer Science; 12th International conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2009, part I. <10.1007/978-3-642-04268-3_47>. <inria-00430867>
  • Nadia Boubchir, Stephane Cotin, Christian Duriez, Jérémie Dequidt, Jeremie Allard, et al.. Computer-Based Simulation of IOL Injection: Toward a Full Featured Cataract Surgery Training System. Annual Meeting of the American Academy of Ophthalmology, 2009, San Diego, United States. 2009. <hal-00839449>
  • Yiyi Wei, Stéphane Cotin, Le Fang, Jérémie Allard, Chunhong Pan. Toward Real-time Simulation of Blood-Coil Interaction during Aneurysm Embolization. Guang-Zhong Yang and David Hawkes and Daniel Rueckert and Alison Noble and Chris Taylor. MICCAI 2009 - International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2009, London, United Kingdom. Springer, 5761, pp.198-205, 2009, Lecture Notes in Computer Science; Medical Image Computing and Computer-Assisted Intervention. <10.1007/978-3-642-04268-3_25>. <hal-00839717>
  • Jérémie Dequidt, Maud Marchal, Christian Duriez, Erwan Kerrien, Stéphane Cotin. Interactive Simulation of Embolization Coils: Modeling and Experimental Validation. Medical Imaging Computing and Computer Assisted Intervention -MICCAI'08, Sep 2008, New York City, United States. Springer, 5241, pp.695-702, 2008, Lecture Notes in Computer Science. <10.1007/978-3-540-85988-8_83>. <inria-00336907>
  • Guillaume Saupin, Christian Duriez, Stephane Cotin, Laurent Grisoni. Efficient Contact Modeling using Compliance Warping. computer graphics international, 2008, Istambul, Turkey. 2008. <hal-00844039>
  • François Faure, Jérémie Allard, Stéphane Cotin, Paul Neumann, Pierre-Jean Bensoussan, et al.. SOFA: A modular yet efficient simulation framework. Philippe Merloz and Jocelyne Troccaz. Surgetica 2007 - Computer-Aided Medical Interventions: tools and applications, Sep 2007, Chambéry, France. pp.101-108, 2007, Surgetica 2007, Gestes médicaux chirurgicaux assistés par ordinateur. <inria-00319407v2>
  • Jérémie Allard, Stéphane Cotin, François Faure, Pierre-Jean Bensoussan, François Poyer, et al.. SOFA - an Open Source Framework for Medical Simulation. MMVR 15 - Medicine Meets Virtual Reality, Feb 2007, Palm Beach, United States. IOP Press, 125, pp.13-18, 2007, Studies in Health Technology and Informatics. <inria-00319416>
  • Xunlei Wu, K Krissian, Vincent Luboz, Stéphane Cotin, Steve Dawson. Smooth vasculature reconstruction from patient scan. Proceedings of the Virtual Environment Interactions and Physical Simulation workshop (VRIPHYS), 2005, Unknown, Unknown or Invalid Region. 2005. <hal-01386222>
  • Stéphane Cotin, Christian Duriez, Julien Lenoir, Paul Neumann, Steven Dawson. New approaches to catheter navigation for interventional radiology simulation. International Conference on Medical Image Computing and Computer-Assisted Intervention, 2005, Unknown, Unknown or Invalid Region. pp.534--542, 2005. <hal-01386225>
  • Stéphane Cotin, Paul Neumann, Xunlei Wu, Sylvere Fonteneau, P Bensoussan, et al.. Collaborative development of an open framework for medical simulation. MICCAI Open-Source Workshop, 2005, Unknown, Unknown or Invalid Region. 34, 2005. <hal-01386219>
  • Vincent Luboz, Xunlei Wu, Karl Krissian, Carl-Fredrik Westin, Ron Kikinis, et al.. A segmentation and reconstruction technique for 3d vascular structures. International Conference on Medical Image Computing and Computer-Assisted Intervention, 2005, Unknown, Unknown or Invalid Region. pp.43--50, 2005. <hal-01386224>
  • Dimitris Metaxas, Stéphane Cotin. Medical Simulation: International Symposium, ISMS 2004, Cambridge, MA, USA, June 17-18, 2004, Proceedings. Medical Simulation, Jun 2004, Boston, United States. Springer, 2004. <hal-01386226>
  • Stéphane Cotin, Nicholas Stylopoulos, Mark Ottensmeyer, Paul Neumann, David Rattner, et al.. Metrics for laparoscopic skills trainers: the weakest link!. International Conference on Medical Image Computing and Computer-Assisted Intervention, 2002, Unknown, Unknown or Invalid Region. pp.35--43, 2002. <hal-01386231>
  • Stéphane Cotin, David W Shaffer, Dwight A Meglan, Mark P Ottensmeyer, Patrick S Berry, et al.. CAML: A general framework for the development of medical simulation systems. AeroSense 2000, 2000, Unknown, Unknown or Invalid Region. pp.294--300, 2000. <hal-01386234>
  • Hervé Delingette, Stéphane Cotin, Nicholas Ayache. Efficient Linear Elastic Models of Soft Tissues for real time surgery simulation. Medecine Meets Virtual Reality VII, 1999, no address, United States. IOS Press, pp.139--151, 1999, Interactive Technology and the New Paradigm for He althcare. <inria-00615683>
  • Hervé Delingette, Stéphane Cotin, Nicholas Ayache. A Hybrid Elastic Model Allowing Real-Time Cutting Deformations and Force Feedback for Surgery Training and Simulation. Thalmann, N. and Thalmann, D. Computer Animation (Computer Animation'99), 1999, no address, United States. IEEE Computer Society, pp.70--81, 1999. <inria-00615820>
  • Nicholas Ayache, Stéphane Cotin, Hervé Delingette. Surgery simulation with visual and haptic feedback. Proceedings of the Eighth International Symposium of Robotics Research, 1997, Hayama, Japan, Japan. 1997. <inria-00615794>
  • Stéphane Cotin, Hervé Delingette, J.-M. Clement, V. Tassetti, Jacques Marescaux, et al.. Volumetric Deformable Models for Simulation of Laparoscopic Surgery. Proceedings of the International Symposium on Computer and Communication Systems for Image Guided Diagnosis and Therapy, Computer Assisted Radiology (CAR'96), 1996, no address, Germany. Elsevier, 1124, 1996, International Congress Series. <inria-00615768>
  • Stéphane Cotin, Hervé Delingette, Jean-Marie Clément, V. Tassetti, Jacques Marescaux, et al.. Simulation de chirurgie hépatique avec système de retour de forces. Interface to Real and Virtual Worlds, 1996, no address, France. AJIIMD, pp.139-148, 1996. <inria-00615763>
  • Stéphane Cotin, Hervé Delingette, Jean-Marie Clément, V. Tassetti, Jacques Marescaux, et al.. Geometric and Physical Representations for a Simulator of Hepatic Surgery. Medecine Meets Virtual Reality IV, 1996, San Diego, USA, United States. IOS Press, 29, pp.139-151, 1996, Studies in Health Technology and Informatics. <inria-00615766>
  • Stéphane Cotin, Hervé Delingette, Nicholas Ayache. Real Time Volumetric Deformable Models for Surgery Simulation. Visualization in Biomedical Computing, Proceedings, 1996, Hamburg (D), Germany. Springer, 1131, 1996, Lecture Notes in Computer Science. <inria-00615771>
  • Gérald Quatrehomme, Hervé Delingette, Stéphane Cotin, Gérard Subsol, Márta Fidrich, et al.. A Fully Tridimensional Method for Facial Reconstruction based on Deformable Models. International Association for Craniofacial Identification, 1995, no address, United States. 1995. <inria-00615746>
  • Stéphane Cotin, Hervé Delingette, Nicholas Ayache. New Perspectives for Realistic Simulations of Hepatic Surgery. Actes du Congrès Mondial de Télémedecine, 1995, Toulouse, France, France. 1995. <inria-00615742>
  • Hervé Delingette, Gérard Subsol, Stéphane Cotin, Jérôme Pignon. Simulation de chirurgie craniofaciale et réalite virtuelle. Interface des Mondes Reels et Virtuels (IMRV'94), 1994, Montpellier, France. pp.399--408, 1994. <inria-00615733>
  • Hervé Delingette, Gérard Subsol, Stéphane Cotin, Jérôme Pignon. A Craniofacial Surgery Simulation Testbed. Visualization in Biomedical Computing (VBC'94), 1994, no address, United States. pp.607--618, 1994. <inria-00615702>

Poster communications

  • René Anxionnat, Federico Rocca, Serge Bracard, Jérémie Dequidt, Erwan Kerrien, et al.. Evaluation of a computer-based simulation for the endovascular treatment of intracranial aneurysms. 10th congress of the World Federation of Interventional and Therapeutic Neuroradiology - WFITN 2009, Jun 2009, Montréal, Canada. <inria-00432289>

Books

  • Stéphane Cotin, Pierre Jannin, Dean Barratt, Nassir Navab, Gabor Fichtinger. Information Processing in Computer-Assisted Interventions - Proceedings of the 4th International IPCAI conference, Heidelberg, June 26, 2013.. Barratt, D. and Cotin, S. and Fichtinger, G. and Jannin, P. and Navab, N. Springer, 7915, pp.111, 2013, 978-3-642-38568-1. <hal-00856356>

Book sections

  • François Faure, Christian Duriez, Hervé Delingette, Jérémie Allard, Benjamin Gilles, et al.. SOFA: A Multi-Model Framework for Interactive Physical Simulation. Yohan Payan. Soft Tissue Biomechanical Modeling for Computer Assisted Surgery, 11, Springer, pp.283-321, 2012, Studies in Mechanobiology, Tissue Engineering and Biomaterials, 978-3-642-29013-8. <10.1007/8415_2012_125>. <hal-00681539>
  • Yiyi Wei, Stéphane Cotin, Jérémie Dequidt, Christian Duriez, Jérémie Allard, et al.. A (Near) Real-Time Simulation Method of Aneurysm Coil Embolization. Yasuo Murai. Aneurysm, InTech, pp.223-248, 2012, 978-953-51-0730-9. <10.5772/48635>. <hal-00736865>
  • Olivier Comas, Zeike A Taylor, Jérémie Allard, Sébastien Ourselin, Stéphane Cotin, et al.. Efficient nonlinear FEM for soft tissue modelling and its GPU implementation within the open source framework SOFA. Fernando Bello, Philip J. Edwards. ISBMS 2008 - International Symposium on Biomedical Simulation - 2008, 5104, Springer Berlin Heidelberg, pp.28--39, 2008, Lecture Notes in Computer Science, 978-3-540-70521-5. <10.1007/978-3-540-70521-5_4>. <hal-00841568>
  • Maud Marchal, Jérémie Allard, Christian Duriez, Stéphane Cotin. Towards a framework for assessing deformable models in medical simulation. Fernando Bello, Philip J. Edwards. ISBMS '08 - International Symposium on Biomedical Simulation - 2008, 5104, Springer Berlin Heidelberg, pp.176--184, 2008, Lecture Notes in Computer Science, 978-3-540-70521-5. <10.1007/978-3-540-70521-5_19>. <hal-00841569>
  • Guillaume Saupin, Christian Duriez, Stephane Cotin. Contact model for haptic medical simulations. Fernando Bello, Philip J. Edwards. ISBMS 2008 - International Symposium on Biomedical Simulation - 2008, 5104, Springer Berlin Heidelberg, pp.157--165, 2008, Lecture Notes in Computer Science, 978-3-540-70521-5. <10.1007/978-3-540-70521-5_17>. <hal-00841570>
  • Nicholas Ayache, Stéphane Cotin, Hervé Delingette. Surgery Simulation with visual and haptic feedback. Shirai, Y. and Hirose, S. Robotics Research, the Eigth International Symposium, Springer, pp.311--316, 1998. <inria-00615093>

Patents

  • Stéphane Cotin, Géry Casiez, Myriam Lekkal, Raffaella Trivisonne. Interface de commande à distance d'un dispositif de contrôle et d'affichage d'informations dans une salle d'opération chirurgicale. France, N° de brevet: 14 60867. 2014. <hal-01095037>

Other publications

  • Dean Barratt, Pierre Jannin, Gabor Fichtinger, Stéphane Cotin. Information Processing in Computer-Assisted Interventions: 4th International Conference, 2013. Information processing in computer-assisted interventions: 4th international conference, 2013. 2014. <hal-01211676>
  • Stéphane Cotin, Nicholas Stylopoulos, Mark Ottensmeyer, Paul Neumann, Ryan Bardsley, et al.. Surgical training system for laparoscopic procedures. US Patent App. 10/797,874. 2004. <hal-01386228>

Reports

  • Steven L Dawson, Mark P Ottensmeyer, Robert D Howe, Stéphane Cotin, Amy Kerdok, et al.. Enabling Technologies for Advanced Soft Tissue Modeling. [Research Report] DTIC Document. 2006. <hal-01386218>
  • D Valtorta, M Hollenstein, A Nava, Vincent Luboz, Mh Lu, et al.. Mechanical characterization of soft tissue: comparison of different experimental techniques on synthetic materials. [Research Report] ETH Zurich. 2005. <hal-01386220>
  • Stéphane Cotin, Hervé Delingette, Nicholas Ayache. Efficient Linear Elastic Models of Soft Tissues for Real-time Surgery Simulation. RR-3510, INRIA. 1998. <inria-00073174>
  • Stéphane Cotin, Hervé Delingette, Nicholas Ayache. Real-time Elastic Deformations of Soft Tissues for Surgery Simulation. RR-3511, INRIA. 1998. <inria-00073173>
  • Hervé Delingette, Gérard Subsol, Stéphane Cotin, Jérôme Pignon. A Craniofacial surgery simulation testbed. [Research Report] RR-2199, INRIA. 1994. <inria-00074472>

Theses

  • Stéphane Cotin. Modèles anatomiques déformables en temps réel : application à la simulation de chirurgie avec retour d'effort. Informatique [cs]. Université Nice Sophia Antipolis, 1997. Français. <tel-00630956>

News

Nov 2nd, 2016: visiting Twente University
Oct 2nd, 2016: visiting Twente University

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